07/16/2026
Celebrating the first publication of my PhD student, Yumi Chang, in Veterinary Pathology. 🎉
“Applying artificial intelligence to automate clinical data extraction from veterinary electronic health records: A practical guidance and comparative scoping review”
Veterinary EHRs hold enormous research value, but almost all of it is locked inside unstructured free text.
Turning that text into structured, analyzable data is still slow, manual, and standard-free. In this new open-access review, we asked: how are AI tools actually being used to automate clinical data extraction from unstructured EHRs in veterinary and human medicine?
👉 We screened 5,796 original research papers across PubMed, CAB Abstracts, Web of Science, and ACL Anthology
👉 Included 54 studies (23 veterinary, 31 human) on AI-based clinical data extraction
👉 Compared where the two fields diverge: veterinary work leans on large supervised datasets, while human medicine increasingly uses prompt-based LLMs that need far fewer annotated examples
In this article, we provided:
🎯 A step-by-step framework covering data preparation, platform and privacy decisions, and prompt engineering, plus a worked case study extracting 62 variables from canine pancreatitis records (Fig. 5)
🎯 An annotated prompt template built from the components that actually improved performance in the literature (Table 6)
This article is written specifically to help veterinary researchers adopt these tools without heavy coding or infrastructure.